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Diagrams​: 'Moving pictures of thought'

Charles Sanders Peirce (1839 - 1914)

Labyrinth of the Night: An architectural emblem of life for a Martian World

11/24/2023

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 ❉ Blog post 22 on diagrams in art and science covers a project I worked on to design a fictional city on Mars. The blue prints for the city are based on a diagram of one of the oldest and most remarkable molecules ever discovered in the history of biology, the Ribosome. These molecular printers are found in all cellular life on earth, and NASA funded ribosome research is raising some of the most profound and exciting questions about the origins and future of life itself.
 
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Figure1: Noctus Labyrinthus (Labyrinth of the night), a vast region of labyrinthine canyons on Mars.
The City:

The 2021 CITYA group exhibition in Hong Kong, curated by Janet Fong, invited artists to explore how humans interact with urban environments in the 21st century. My installation, Noctus Labyrinthus, named after a vast canyon system on Mars, offered a perspective on how urban living might extend into space.

One of my favourite city-related diagrams is Harry Beck's 1933 experimental map of the London underground system (figure 2). What I find particularly interesting is the way the image acts a palimpsest of Beck's mind at work using the diagram as a thought tool. Train lines are sketched out, erased, then re-drawn in a process of connection, disconnection, and reconnection. It's intriguing to note that Beck's background as an electrical draftsman likely influenced his unique approach to this project.

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Figure 2: Henry C. Beck, Original sketch for the London Underground Railways Map, 1931,
Pencil and coloured inks on squared paper, 19 x 24 cm
Beck prioritized clarity over geographical fidelity, a step the transport officials considered too radical for the British public of the time. According to the Transport for London website however, "A successful trial print-run showed that it was just what the public wanted. The result was an instantly clear and comprehensible chart that became an essential guide to London - and a template for transport maps the world over." 

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Figure 3: "Map of London's Underground Railways. (A new design for an old map. We would welcome your comments. Please write to Publicity Manager, 55, Broadway, Westminster, S.W.1.)"
Harry Beck, Published by London Transport, 55, Broadway, Westinster, S.W.1, [January, 1933]., London, 1933
In preparing for the CITYA exhibition, Beck's sketch reminded me a diagram from biology I'd had pinned to my studio wall since I discovered it in a 2015 paper in the Proceedings of the National Academy of Sciences. Somewhat more complex than Beck's map, it depicts a molecular network a trillion times smaller and four Billion times older than the 1933 London underground system. 
Figure 4 is a diagrammatic unravelling of the large subunit of the human ribosome, courtesy of Anton Petrov and Loren Williams (1), who first published the image in their paper titled "History of the ribosome and the origin of translation". Unusually for a scientific paper, the discussion section describes the field of ribosome research as "posing some of the most profound and exciting questions in science…" (2)

Their use of such emotive adjectives in a scientific text reminded me of the time I'd been reprimanded after an undergraduate biochemistry exam for using the words subtle, intricate and profound to describe what I thought were subtle, intricate and profound chemical processes in the human metabolic system. Professor Baker, then head of department, summoned me to his office to suggest that if I wanted to use such terms I should sign up for creative writing classes in the English department, making it clear that scientific texts were no place for subjective expression.

I realised much later this rebuke had been an important moment in my transition from science to art, and that the sciences could indeed be approached subjectively from a whole range of alternative, creative and expressive aspects, including poetry, music, dance and art. 


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Figure 3: Secondary structure of the human ribosome large subunit.
Image courtesy of Anton Petrov and Loren Williams.
Centre for the Origins of Life Research (COOL), Georgia Institute of Technology
Creative Commons Attribution-ShareAlike 3.0 Unported License (CC BY-SA).

​The Blue-print:

Ribosomes are found in all cellular life on earth, and 
the molecule holds such an important place in biology that the 2009 Nobel prize in medicine and physiology was awarded for the discovery of its complete molecular structure (4). A single one of your cells during mitosis (cellular division) can contain as many as 10 million ribosomes, which form an essential part of the molecular machinery that uses the genetic information embodied in DNA to print the tens of thousands of proteins that builds life on earth and regulates it at a chemical level.

Further studies of the ribosome have involved pealing away the layers of its structure like an onion, to understand how they evolved over the aeons. At the very centre was discovered the highly conserved core of the ribosome (shown below in blue), estimated to have arisen some 4 billion years ago (3). By comparison, the age of Earth is estimated at 4.5 billion years old.

​
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I contacted Anton Petrov at the NASA funded Centre for the Origins of Life Research (COOL), at Georgia Tech, to ask for permission to adapt diagrams from the Loren Williams research group for use in this project. I was given a link to a specially designed page of their website containing copyright free images of ribosome structures from various forms of life and in various file formats (Link below).
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Figure 4:  The first six phases of the accretion model of ribosomal evolution.
  From: History of the ribosome and the origin of translation, 2015, Petrov et. al.

COOL receives funding from NASA’s department of exobiology, in the belief that knowing more about the origins of life on earth at the chemical level will potentially help astrobiologists understand what chemical signatures to look for on Mars in their search for extraterrestrial life.

The fact that the structure of ribosomes is so similar across all of life on earth supports the idea that life arose from a single cell or  'Universal Common Ancestor', a theory first proposed by Charles Darwin over 150 years ago. Meanwhile the 'Ribosome World Hypothesis' proposes that the first ancient, primordial ribosomes were self-replicating intermediates between a prebiotic world and the first cellular life forms. 
 
By choosing the diagram of the ribosome as a blueprint for our first extraterrestrial colony, I wanted to connect the molecular genesis of life with its potential futures, and design a poetic emblem for the remarkable moment when organic life attempts to spread out into the solar system for the first time. 


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Figure 5: Noctis Labyrinthus
The Labyrinth:

In looking for a suitable location for the fictional martian city I first considered Asimov crater, named after the prolific writer and biochemistry professor Isaac Asimov. The smooth terrain of Arcadia Planitia also seemed an appropriate location. The term 'Arcadia' symbolizes an idyllic, pastoral harmony in Greek mythology. Known as the mythical home of Pan, the god of shepherds, hunters, meadows, and forests of the mountain wilds, Arcadia has been a source of inspiration for artists and writers back to the ancient times.

However I finally chose Noctis Labyrinthus, a region often poetically referred to as the 'Labyrinth of the Night'. This dense network of intersecting valleys and canyons forms a geological maze carved into the Martian crust at the western end of Valles Marineris, the largest canyon in our solar system. In the mornings its shadowy recesses are deep and cold enough to briefly fill with mist at sun rise, adding its mysterious allure.
 
The next step was to make a physical model of a small section of Noctus Labyrinthus, and this involved downloading 'high fidelity stereo-photogrammetric data' from NASA’s ‘High Resolution Imaging Science Experiment’ or HiRISE, the most powerful camera ever sent to another planet (figure 6) (5).
 

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Figure 6: A high resolution 'Data Swath' created in a single pass of HiRISE over the Noctis Labyrinthus region of Mars.
​

​Figure 7 is the original image used in my project proposal for CITYA. This false-colour elevation map depicts a region in Noctis Labyrinthus. Blue represents the valley floors and red the higher altitudes of the smooth plateaux. The diagram of the ribosome molecule was added and adapted to fit the terrain, creating a city-like network of interconnected domes and buildings viewed from above.
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Figure 7:  Topographic Map of Mars with city plan based on the ribosome molecule.
  Image adapted by Michael Whittle (Courtesy of ESA / DLR / FU Berlin, as part of the HiRISE project).

​Computer programmer and 3D modeler Alan Gordie, who works under the name Organic Computer, has adapted NASA HiRISE data to create 3D representations of geographic features on Mars. I've included a link below to learn more about his modelling process and his other fascinating projects.
​

016221_2175_overview_mars_hirise by OrganicComputer on Sketchfab


Alan kindly gave permission to use one of his HiRISE models of a section of the labyrinth, and the data was then adapted for compatibility with CNC milling by Homan Ho at my favourite Hong Kong fabricators 'FabLab Tokwawan'. This finally allowed us to create a large-scale model of a portion of Noctus Labyrinthus in high-density architectural foam, with enough detail to capture all the subtle qualities of the martian landscape.

Homan ran a cutting simulation to check for potential bugs in the data, then started the process at a low resolution to remove the bulk of the foam and create a roughly stepped series of terraces. Switched to a finer modelling blade allowed us to mill the surface with millimetre precision. The tiny craters, rippling landslides, and intricate cliffs gradually became visible, and a small section of actual Martian landscape, 140 million miles away, slowly emerged in downtown Kowloon in Hong Kong. 
​
Homan Ho's video footage of the CNC milling process at FabLab Tokwawan in Hong Kong

Homan also sourced iron oxide pigments, or powdered haematite, so we could colour the surface of the model using materials similar to those found in the rusty martian dust. The model was then shipped to and installed in the gallery along with all of the reference materials, drawings, and notes that had gone in to generating the project.

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Figure 9: CNC milled replica model of the Martian landscape for the CITYA exhibition, 2021
Exhibited along with NASA HiRISE image data swathes and Martian maps


The gallery became a studio for the duration of the exhibition, and the model buildings were printed using high resolution 3D UV-resin printers and gradually added to the model. Their forms were based on designs created by SEArch+ / Space Exploration Architecture, winners of 6 NASA Centennial Challenge Competitions. This team of engineers and architects specialkise in developing human supporting architecture for living and exploring space.

The goal of NASA's 2019 habitat challenge was to create 3D-printed sustainable housing for deep space exploration, including the agency’s planned journey to Mars (6). Find our more about SEArch+'s ambitious projects here:  http://www.spacexarch.com/​
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MARS X-HOUSE is the first place winner in 100% Virtual Design within NASA’s Phase 3 3D-Printed Habitat Challenge.

Once the interior installation was complete, sections of the ribosome diagram were enlarged and attached as semi-transparent, coloured vinyl to the gallery windows, creating a contrast in scale with the city plans and modeled landscape inside.

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Noctus Labyrinthus, CITYA 2021 installation view, Centre for Visual Arts, Hong Kong Baptist University
Credit: ESA/DLR/FU Berlin & NASA/JPL-Caltech/MSSS, CC BY-SA 3.0 IGO

This video presents a simulated flight over the eastern part of Noctis Labyrinthus on Mars, as captured by the High Resolution Stereo Camera (HRSC) aboard Mars Express. In order to create it, and image mosaic was built using data collected from eight orbits (0442, 1085, 1944, 1977, 1988, 10497, 14632 and 16684) of ESA’s Mars Express and its HRSC.

The perspective view highlights a unique landscape featuring "graben" - sunken sections of the planet's crust that have subsided relative to their surroundings. These distinctive features were shaped by intense volcanic activity in the nearby Tharsis region. The powerful volcanism caused large areas of Martian crust to arch upwards, stretching and stressing the surface.

​As a result, the crust thinned out, developed faults, and eventually subsided. This geological process created the fascinating terrain visible in the video, characterized by dramatic valleys and depressions that offer a glimpse into Mars' dynamic geological history.


Below are images from project development and links to learn more:


​
​LINKS:

  • Explore updates to Becks design and geographical accurate designs at Mark Node's website here.
  • ​The Ribosome Gallery created by the Loren Williams research group can be accessed here.
  • More of Organic Computers models of Mars and the process of their creation can be found here on the Sketchfab blog "Science highlight".
  • You can also learn more about Homan Ho's work at Fab Lab TokwaWan in Hong Kong here.
​
REFERENCES:

1) Petrov, A S., Bernier, C. R., Gulen, B., Waterbury, C. C., Hershkovitz, E., Hsiao, C., Harvey, S. C., Hud, N. V., Fox, G. E., Wartell, R. M., and Williams, L. D. (2014) Secondary Structures of rRNAs from All Three Domains of Life, PLoS One 9, e88222. 2.
 
2) Petrov, A S., Bernier, C. R., Hershkovitz, E., Xue, Y., Waterbury, C. C., Grover, M. A., C., H. S., Hud, N. V., Wartell, R. M., and Williams, L. D. (2013) Secondary Structure and Domain Architecture of the 23S rRNA, Nucleic Acids Res. 417522-7535.

3) Petrov, Anton S. et al. (2015) History of the ribosome and the origin of translation. PNAS, 112:50. Pages: 15396 - 15401. Online: www.pnas.org/cgi/doi/10.1073/pnas.1509761112  
https://www.pnas.org/content/111/28/10251

4) Ramakrishnan V. 2002Ribosome structure and the mechanism of translation.
Cell 108:557-2; PMID:11909526; http://dx.doi.org/10.1016/S0092-8674(02)00619-0
2009 Nobel Prize in Medicine, Online: https://www.nobelprize.org/prizes/chemistry/2009/illustrated-information/
 
5) NASA HiRISE DTMS: https://www.uahirise.org/dtm/  

6) NASA Centennial Challenge. Online:  https://www.nasa.gov/directorates/spacetech/centennial_challenges/overview.html
​
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    Dr. Michael Whittle

    British artist and
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